rs36298998 SNP Detail

Summary

• ID
  rs36298998
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122806368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCTCTC CAAAAGCAGC
  CCTCATCACC AGCAACACAG TGAGTCAAAA ACACACATTC CTGGGCCCAG CCTAGATGCT
  CAGCCTGTGT GAGACTGTAT AGGGGCCCAG TCCATGACCT GTACTATCAC AGGTCTCCGT
  GGGGCTCTGC TCTTAGCTCG AATTTGAATA CTGCTGAGCC AGATGCCTGT CCTCAGAGCT
  S
  TATCCTGGAT CCTGGGTCAT GGGCCTCCCC TGGATGCTTG CTTATATGCT GAGGGTCATA
  GTGCCCTACC TCTCTATCCC GACTTAGCAA ATACCATCAC TGGAACAAGA TCCCCTGGAG
  ATTCCGGTTT TAGTTTTTGT TTCTGTTTTT GCATGTACAG AATGTTTTCA ACTTTGTGAT
  ATTCTACACA AAGATCTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51196355	NES13816692	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36298998					SNP	C	C	C	C	C	G	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196355	NES13816692	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122806368 () rs orientation: forward

Symbol	Name	Function Class
Gm71511	predicted gene, 71511	1325 bp downstream
P2rx7	purinergic receptor P2X, ligand-gated ion channel, 7	within coordinates