rs36299489 SNP Detail

Summary

• ID
  rs36299489
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123268523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCCTGA CTTTAAAAGA
  ACAAAAGTGG CTAAGGTTCA GGCCTGGGGT GCAGGGAGAA CTGAGGCTAA GACCACTGGT
  TTGATAAACT TTCAAGTGCT GTTTGACTTT TCTGTCTGTT TCTTGGACAA GATAGAAACC
  GAAAAGAGAG CAGTAGGAAC CAGGAACACA GACTGCTTTC AGACCTTAGC AGGTTGCTCT
  K
  GAGCATGGTA GAAATACCCT GGAGCTGTGT TATCCACATA TGAAGGGCTT CCATTCTGGG
  CACTGGAGAC TGAGGCAGGA GGCAGGAGGC TCAAAGGATC TTTGTCAAAA ATAAGCAAAG
  GAAGCACTCT CCTATTCTGG ATTTAGCACA GTAGCGTATT TCTGGTTAGA CAGATGCTCA
  AGCCATGTTC TGAGCAGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	WSB/EiJ
ss50808740	NES14203106	PERLEGEN	MM_PANEL2	f	SNP			G		T
ss137077276	ENSMUSSNP1039888	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	WSB/EiJ
rs36299489					SNP	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50808740	NES14203106	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123268523 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	1078 bp proximal
Rr203065	regulatory region 203065	1369 bp proximal
Rr208064	regulatory region 208064	279 bp proximal