rs36300553 SNP Detail

Summary

• ID
  rs36300553
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:63284918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGGTCG TGTGGAGTGT
  CCCTAGGAGA GGATGCACTG TTGGGGGACC GGCCAAGAGG AATTAGTAGA GAGCGGAAGG
  TCCTGGAGTT ACAAAAGTGG ACAAAACAGA ACCCACAAGC ATTCTGTAGT CCTTGTGAGT
  AAGAGGAGAC AGCGGAGCAA CGGCCTGGTT TAAGGCAGGT ACAGTGGCCA GGGTCCTGCC
  K
  TCCTGAGTGT CTCGGTGGGC AAGGGGACGG TGGCCGGGCG CCGCGGGCTG GGTCGGGGCT
  GTTTCGGAGG TGCACCGGTG GCGCCTGCCC TCCAACCAGG CAGGGGGGCC CAGGGCCGCG
  GGGTCAAGGG GCGGGTCCCG GACCGCAGCC GGAACCGGAG GGCGCGGCGC GTGCAGGATC
  GTCCGACTGA GGCCCGCGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52026091	NES15043502	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36300553					SNP	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52026091	NES15043502	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63284918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21914	CpG island 21914	within coordinates
Map2k5	mitogen-activated protein kinase kinase 5	within coordinates
Rr401444	regulatory region 401444	108 bp upstream
Rr680973	regulatory region 680973	256 bp proximal
Tssr90089	transcription start site region 90089	within coordinates
Tssr90090	transcription start site region 90090	178 bp downstream
Tssr90091	transcription start site region 90091	199 bp downstream
Tssr90092	transcription start site region 90092	324 bp downstream