rs36301418 SNP Detail

Summary

• ID
  rs36301418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11172531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCAACA CTGTCTTCAT
  ATAAAGCTAA AGTGCTTAAG AAATGATTTT AAAAAGTAAT TAATTTTTAA TTTTAGGCAG
  TTTCATTTAT ATGTATAATG AATTTTAGTT CTTATCTTCC CCTGTTGTTC TTTTTTATCT
  GCCCACCTTC TTTTGCTAAA ACCCCTTTTC TTCCCAACAG GTCCCTCCAT TACTTTCCTG
  Y
  CTGTTTTATG TGTCTGACCT ACTGAGTTAA GTAGGGTTGC CCTCATGAAC ATGGGTGGGA
  GGTTTTATCC TGGATCCTGG GTTATACCAC TGAAGAAAGT GACACCTCTC TCCTCAGCCA
  CTATTAACTG TTAATAGTCC CTCAGGGTAG GGGTGAAGCC TCCAGAGCCC TTCCTCCCTC
  TAATGAAAAA GTTGATGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50597172	NES13640063	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36301418					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50597172	NES13640063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11172531 () rs orientation: forward

Symbol	Name	Function Class
4930526L06Rik	RIKEN cDNA 4930526L06 gene	1650 bp upstream
Ms4a13	membrane-spanning 4-domains, subfamily A, member 13	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr158299	transcription start site region 158299	1517 bp downstream
Tssr158300	transcription start site region 158300	1533 bp downstream