rs36301857 SNP Detail

Summary

• ID
  rs36301857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131455857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCTGCTC GGCGCAGGCA
  ATTCAAACTG ACAGCGGGTT AGAAAAAGCA GAGAAAGCGG AAGAAAGAGC AAAACCCGGC
  GTGTTCGCTG ACTGACTGCA GCGCGAACTG AGCCTATTCC GAGGCTTCTC CCCTCCACCT
  CGCTACACCG CTGCTCACTT CGGAGCGACC GCTGTGGAAG AGACCTTACG GGTTACGGGC
  Y
  GCAAGTGCGA GAGCTCGGCC GGGAGAGGAC GCCGAGAGCC GTGGTGCAAG GGAGAAAGCC
  CACGGGCGAG CTCCGAGAAG AGGGAGCGGG ACGGGGCCAG AGCCCGCGTG GAAAGGGCTG
  AGGGGCGTTG AATCCTACGA AGAAGCCGCG TGGAGCTGAG CAAGAATTGG AGCGCTCTGC
  GGGCGGAGCT CGCGCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51368042	NES14475974	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36301857					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51368042	NES14475974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131455857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	within coordinates
Gm70877	predicted gene, 70877	431 bp downstream
Rr396286	regulatory region 396286	536 bp downstream
Rr396287	regulatory region 396287	226 bp downstream
Rr418129	regulatory region 418129	1485 bp distal
Rr418130	regulatory region 418130	1870 bp distal
Rr418131	regulatory region 418131	783 bp distal
Rr418132	regulatory region 418132	206 bp distal
Rr418133	regulatory region 418133	15 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	767 bp upstream
Tssr8629	transcription start site region 8629	248 bp downstream
Tssr8630	transcription start site region 8630	208 bp downstream
Tssr8631	transcription start site region 8631	117 bp downstream
Tssr8632	transcription start site region 8632	242 bp upstream
Tssr13598	transcription start site region 13598	1571 bp upstream
Tssr13599	transcription start site region 13599	1529 bp upstream
Tssr13600	transcription start site region 13600	1374 bp upstream
Tssr13601	transcription start site region 13601	826 bp upstream
Tssr13602	transcription start site region 13602	734 bp upstream
Tssr13603	transcription start site region 13603	579 bp upstream