rs36301868 SNP Detail

Summary

• ID
  rs36301868
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47448696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCTGTGT TTACCTAGAT
  CCCACTGAAG CTGAGTGGAA TCCTAAGCAA CTTTAACTTC ACCAAGCTTT GGTCAATCCA
  TCTGTAATAA GGATCAGAGC AACACACAGA CACACAGACA CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACAGA CACGCCAGTA CAGTAAATGA AGCATCAGGC
  W
  CCCTGGAGAG CATGCCTGTT AGCATCCGGC ACCATGGAAG TAGCTGCTGA CACTGGCTCT
  TATTAGCATT CCCTAGAGTC CTGTGGAGGA TCAGAGCATT CACGACTGGT ATTTGTCTGA
  AATAAACACT CAGGGAAGGA AATGACCGTG AAAGCAAAAC ACCTCCCAAA TCCAAACAGA
  CATGATGTCT CCTTTGCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50859966	NES13511550	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	A	T	T	T		T	T	T	T		T
ss325826230	CHEV_19_47534747	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36301868					SNP	T	T	A	T	T	T	A	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50859966	NES13511550	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47448696 () rs orientation: forward

Symbol	Name	Function Class
Gm52384	predicted gene, 52384	534 bp downstream
Rr549060	regulatory region 549060	1021 bp distal
Rr549061	regulatory region 549061	within coordinates
Rr549062	regulatory region 549062	576 bp proximal
Rr549063	regulatory region 549063	1184 bp proximal
Rr549064	regulatory region 549064	1773 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	351 bp downstream
Tssr159730	transcription start site region 159730	501 bp downstream