rs36302484 SNP Detail

Summary

• ID
  rs36302484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45314220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGACTAC AGAATGGGCC
  CAGGGGCAAG AGATATCAGG GTGGGACCTA CTGGGTGGGA GGGTGAAGAA TCCCTTGAGT
  GAAGACTGGG GACCCACACC TGCCTCTACG CATCTCCTCC AGCAGCCAGC CAGAAGCCCA
  AGGAAGTGGG GAGGGGGTGG CTCTGGTCCT GCCAGCTTCT ACCCTGACCC TTTTGGGAAG
  Y
  CTCTTAGAGA GCACGGTGCA GACCACTGGC TCTAAGGTCC CCTAACTGCA GGGTCCCTGG
  GGAGAGAGGA GAGGTTGTTA CAGTTTACTT TGCTGCTCAG AGGTCCCTTC CTTCAGTGCC
  TGTGGAGGTC AGAGACTCTT CCCCTACCCT CACGTGGGTC CCTTGCTCCA ACCAGCCCAG
  GCAGGCAGGT TCAGGGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52013365	NES15030354	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	C	C	T	T	C	T
ss136411204	ENSMUSSNP5098485	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36302484					SNP	C	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013365	NES15030354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45314220 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	820 bp distal
Rr200381	regulatory region 200381	1020 bp distal
Rr209195	regulatory region 209195	1781 bp proximal
Tssr84783	transcription start site region 84783	348 bp downstream
Tssr84784	transcription start site region 84784	296 bp downstream
Tssr84785	transcription start site region 84785	220 bp upstream
Tssr84786	transcription start site region 84786	252 bp upstream
Tssr84787	transcription start site region 84787	274 bp upstream
Tssr84788	transcription start site region 84788	305 bp upstream
Tssr84789	transcription start site region 84789	331 bp upstream