rs36305469 SNP Detail

Summary

• ID
  rs36305469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60215063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCACGT AAATGTCCAT
  TCCCGCTTGC TAACACAAAG CTTGCTGGCT CAGACGGTCC CTGAGGACTC TGAAACACCC
  TCCAGCCTGG GTGGACCCTG GCTTGATGCC TACCTGTCCA TTGCTGCCAG CATCAGGGTC
  CCGGGCCTTG ACTGTGGCTA CTCGCTGGCC CACAGGACAG TCCTCAGGCA CACTGATGGC
  Y
  GAGTCCGAGG TGAAGTCGAA GCGTGGGCTG TTATCATTCT CATCCAGAAC GGTGATGTAG
  ACCTGGGGGC AGACACACTC AGCCACCTCC TGCCTCCTTC TCCAAAATAT CCTTAGGTCA
  TGAGGTCAGC AGGGGCCTTG AGCAAACCTT CAAGTCCCAA GCTCCATCCC ACCTTCTCTG
  AGCAATATCC GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50866370	NES14170662	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		T
ss323325226	CHEV_10_59842032	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36305469					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866370	NES14170662	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60215063 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr368996	regulatory region 368996	1925 bp upstream
Rr432129	regulatory region 432129	784 bp proximal
Rr432130	regulatory region 432130	1732 bp proximal
Tssr93630	transcription start site region 93630	1303 bp upstream
Tssr93631	transcription start site region 93631	1362 bp upstream
Tssr97724	transcription start site region 97724	938 bp downstream