rs36306562 SNP Detail

Summary

• ID
  rs36306562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99507865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAGCAGCA CTTGCTTAAA GAGACGACTA AAGGGAAGGA
  TTGTTTTCCA ACGTGTAGAG AGGGCAAGTT ACAAGTGTGC GTTCGTGTGC TACGGAGGAG
  Y
  GCTCAAGGAG CCACAGAAAA TAAGGGGGTG GGGATGGGAA GCTGGGCTCA CCAGCTCCTG
  GGCATTCCCC GGGCTCTAGA TTGTCCCCAG GACTAAGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51920257	NES14942875	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36306562					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920257	NES14942875	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99507865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	within coordinates
Rr400465	regulatory region 400465	170 bp upstream
Rr652012	regulatory region 652012	231 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	401 bp upstream
Tssr68078	transcription start site region 68078	465 bp upstream
Tssr73711	transcription start site region 73711	355 bp upstream
Tssr73712	transcription start site region 73712	214 bp downstream
Tssr73713	transcription start site region 73713	252 bp downstream
Tssr73714	transcription start site region 73714	334 bp downstream
Xrra1	X-ray radiation resistance associated 1	560 bp upstream