rs36308301 SNP Detail

Summary

• ID
  rs36308301
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19277776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGGGA GAAGGGAAGG
  AGGGGTTAGA AGAAGGAGGA AAAGAAAAGG AAGAAAAGAA ATCCAACAGG GAATAGAGAA
  AAAGATGTGT TTCTCAAGTT CTGCCTGAAG CACCCTGCAT TTCCTTCATT TGACTTACAG
  TAAATTAATA ATAATAACAG TAACAATAAT AGATCTACAG GACTGTTCAT TGCGAGGTAG
  S
  AGTCCTCAGC TTGGCTGTTA GGAACCGCTG TCTTCCTCCT AGTCTATCTG AAGCCTTCTC
  CTACTCACGG AGCCTCCGAC CCTGCCGGAG CTCTAGAATG CACTGGAGTT TAAAGACAAT
  CTCCCTTTAC AGATTCACCC TCATCAGGTT TAATAACTTC CACCCCAAAT TACCCCAACC
  CTCCTCATTC CCTCCTGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916992	NES13479826	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36308301					SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916992	NES13479826	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19277776 () rs orientation: forward

Symbol	Name	Function Class
Rr408233	regulatory region 408233	1397 bp distal
Rr408234	regulatory region 408234	1778 bp distal
Rr408235	regulatory region 408235	1028 bp distal
Rr408236	regulatory region 408236	1158 bp distal
Rr408237	regulatory region 408237	within coordinates
Rr408238	regulatory region 408238	1201 bp proximal
Rr408239	regulatory region 408239	1419 bp proximal
Tfap2b	transcription factor AP-2 beta	1362 bp upstream
Tssr6030	transcription start site region 6030	1388 bp upstream
Tssr6031	transcription start site region 6031	1431 bp upstream
Tssr6032	transcription start site region 6032	1446 bp upstream
Tssr6033	transcription start site region 6033	1462 bp upstream
Tssr6034	transcription start site region 6034	1486 bp upstream
Tssr6035	transcription start site region 6035	1518 bp upstream
Tssr6036	transcription start site region 6036	1542 bp upstream
Tssr6037	transcription start site region 6037	1560 bp upstream
Tssr6038	transcription start site region 6038	1588 bp upstream
Tssr6039	transcription start site region 6039	1603 bp upstream