rs36310595 SNP Detail

Summary

• ID
  rs36310595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:59995434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTTTAT AGCTTCTTCT
  TATTTCTGCC TTCCGAAGTA TTCCAGAAGT CCCCTGTCAA TCATATCACA TGGTTCAGGT
  CAAGACCTTA CTTAGGGGGA AACATGTAAA TGAAATCCCT GGGAAATGAG ACTCAAATAA
  AACATTTAAA ATTACATAGA ACTTTCCATT GCAGAGTCAG GAAGGATTTC CTGGAGGGGT
  Y
  GGCAGAGTCG GGAATGGACA AGTCAAATGT GGCTTTCAAT GTGAAGAAAC TACAGATTTA
  GGATAAAATA GTTTTTCTCT CCTCAAATCC ATGTAAAGTA CACAGGGCAC AGCACAGCCG
  CATAGGCAGC CAATGAGCTG CTGGCAACAT CGCCCCCTGG TGTTCATCTG GTGGTAGCCT
  CTCTTTTCTT TTTTCCATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52023990	NES15040347	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36310595					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52023990	NES15040347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:59995434 () rs orientation: forward

Symbol	Name	Function Class
Rr196116	regulatory region 196116	within coordinates
Rr204367	regulatory region 204367	within coordinates
Rr209877	regulatory region 209877	1368 bp proximal
Thsd4	thrombospondin, type I, domain containing 4	within coordinates