rs36310939 SNP Detail

Summary

• ID
  rs36310939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8930361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACGGGGAA GCAAGACTGC
  AATTCAAGCT CAGTGGTGTA TGTATACAGA CTGCTGCCTC AGGATTAACA ATCAACCTTA
  GCAACTGCCC CTGCTTTTAA GCGTACTGCA GTATTCTCTT TTTTGGTTTG GTCTGCTCTT
  TTGGGTTGGC ATAAGGATTA GATGCCTGAG GAGGGCCCAA TAAGGAGGGA CACAGGGCCT
  Y
  ATAGGTGACT CAGTCAAGGT CGCAGACTGG TTGGTGTTCT GCCTAAGGTC TACTGTGCGG
  CTGATAATCA CAGCACAAGC TGCTGAGCTC TCACCTGGTA GCCCTTCCAT TTCATCACGG
  GCCCTATGAT CGACCAGCTT TCATACTCTC CTCTGCTTCT GAAACCACAC GACTAATTCT
  GGTTGGGGAT CTGCTACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50609134	NES13644051	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36310939					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50609134	NES13644051	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8930361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10588	CpG island 10588	463 bp proximal
Gm59132	predicted gene, 59132	within coordinates
Mta2	metastasis-associated gene family, member 2	702 bp downstream
Rr359578	regulatory region 359578	1361 bp distal
Rr363780	regulatory region 363780	within coordinates
Rr405849	regulatory region 405849	569 bp upstream
Tssr154900	transcription start site region 154900	912 bp downstream
Tssr154901	transcription start site region 154901	829 bp upstream
Tssr154902	transcription start site region 154902	864 bp upstream
Tssr154903	transcription start site region 154903	889 bp upstream
Tssr154904	transcription start site region 154904	980 bp upstream
Tut1	terminal uridylyl transferase 1, U6 snRNA-specific	850 bp upstream