rs36312116 SNP Detail

Summary

• ID
  rs36312116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7500931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTTCTTC TTCACCCCCA
  AAACGCCTCA CAAATACAGC TTTTCTCCCA GTATTTCTCC CTTCCCCACC ACCTGATCCT
  TTGTTCCCAC TCCTACCTGC AACCAGTCCA TCGGCTAAAT CTATTCTCTC TCCCCTTCCC
  AGGGAAATTT TTGTGTCCCT TCTTAACCTA CCAACCCAGA GAAGCCATAA CATTTTTGAT
  Y
  GGCATATAAG TATGGTGAGC TAGTCTTCTG TGAAATCATT CTTCAGTTTT TATGATTCTA
  ATCTTGACCT TCTTAGGTTG TTCTGCAGAT TAAAGATAAC ATGTAGTTAA AAATTTCACA
  TAAAAGAGCT CTGTTCTAGG ATTCCACTTT GCCTTAATGA ACTGCATAAG CCTGCTTGTT
  TTACTCTATA AATATTCGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50642769	NES14032050	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36312116					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50642769	NES14032050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7500931 () rs orientation: forward

Symbol	Name	Function Class
Mmp10	matrix metallopeptidase 10	1422 bp upstream
Rr382877	regulatory region 382877	166 bp downstream
Tssr83744	transcription start site region 83744	1410 bp upstream