rs36313263 SNP Detail

Summary

• ID
  rs36313263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121316329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTCGA CTCCGCCTCT
  TGCCCGCCTA CCACGCTCAC GGCCCCGCAC CTACCTCGTT TGGGTCGGGT CTGTACAGCC
  CCGCCTCTTG CTCCCGCCCC TCCTTCGTTC GGCCTCGCCC CTCCTGCGCC CGCCCCCTTC
  TGTCCACGAG CTGGAGGCTG TGTACTTATG GCTTCTTGCT CCTTTGCGTC CTGCAGCAGG
  Y
  TGAGTCCCTC GCCTGATTCC ACTCTTTGAG GGTAAAGGTT TGGAGCCGAG TTTTCACCTG
  CGCGAAACAC AGATCCAGGA ATAAACGCAT TCATCTCAAA GTCAGCTCCG GGTCCCCGGA
  CATGGCTGGC TGGTCCACAC AGACGCCATA TCGAAGGAAG TGTTTTCCCT TTAATTTTAG
  TCTTTGCCCT TTCTACAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51983396	NES14995669	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36313263					SNP	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51983396	NES14995669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121316329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21156	CpG island 21156	within coordinates
Gins2	GINS complex subunit 2	515 bp upstream
Gm10614	predicted gene 10614	within coordinates
Rr401181	regulatory region 401181	352 bp downstream
Rr671590	regulatory region 671590	65 bp distal
Rr671591	regulatory region 671591	53 bp distal
Rr671592	regulatory region 671592	within coordinates
Tssr83202	transcription start site region 83202	540 bp upstream
Tssr83203	transcription start site region 83203	522 bp upstream
Tssr83204	transcription start site region 83204	510 bp upstream
Tssr83205	transcription start site region 83205	500 bp upstream