rs36313496 SNP Detail

Summary

• ID
  rs36313496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75412981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTTTCA TGAGGCACGG
  CTGTTGGGTC TTTGCTCCAT TCTGAAACCA CAAGAGTGCA GAAGCAGACA GGCAGATGCA
  CAGTCAGCAC TCACTCTTTC CCCTGAAGAA GGCTATGCAG GCCATCTGTG GAGCTCTTCT
  CTAGAACCCT GAGTGGGGGC TATTCCCAAA AGTGGAGGCT AACAGCATTT AACTGCTGTA
  Y
  CATGCAGCCA ATCTTATATG AACAATGCCT AGATGCTTCT CTGTACAAAG TCAAGGGCCC
  CTGAGTTCCC TCTGCCAGTT ACTAACTGGG ATTCTACTCA CCACGTCACT CTTACCAGGG
  ACATCTGAAG ACAGCCGTCA GTTCTTACTA GAACCATTCC TAGAATGTTC TTTAGGACCA
  GATCTAGAGA AGACCGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533212	NES14628253	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36313496					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533212	NES14628253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75412981 () rs orientation: forward

Symbol	Name	Function Class
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Rr404213	regulatory region 404213	1141 bp upstream
Rr495436	regulatory region 495436	136 bp distal
Tssr4478	transcription start site region 4478	589 bp downstream
Tssr126621	transcription start site region 126621	563 bp downstream
Tssr126622	transcription start site region 126622	533 bp downstream
Tssr126623	transcription start site region 126623	1048 bp upstream
Tssr126624	transcription start site region 126624	1092 bp upstream
Tssr126625	transcription start site region 126625	1251 bp upstream
Tssr126626	transcription start site region 126626	1266 bp upstream
Tssr126627	transcription start site region 126627	1282 bp upstream
Tssr126628	transcription start site region 126628	1593 bp upstream
Tssr129768	transcription start site region 129768	734 bp upstream
Tssr129769	transcription start site region 129769	1039 bp downstream
Tssr129770	transcription start site region 129770	1108 bp downstream