rs36314964 SNP Detail

Summary

• ID
  rs36314964
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92133701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTGGGTA CCAGGAACCA
  GGGAAGCTTA ATAAAAAGCA CCCCCGGGCA CCTGGGGGCG TTTCCTTCTT GGCTTTTCCT
  AACAACAGAG CTTTCTACCT GGATACTTAC TACAATTGTG CTGCTTTGAA TAATAAACAA
  ACAAACAAAC AAACAAACAA AAACCCAGAC TGTTGGTAAG CCAGCTAGAG TCCCTACTTG
  S
  AGACAGAGCA GCATGACCTC TCTCTCCTCA GCTGTGTAAC TCCAGAGATT CTTCATTCCC
  CCTGAATAAG GTGAGATTCT AGCTTCAAGG ACCTCAAGTT GAGCAACACC CTCTGTTTGT
  AGTGTCCACT GAACACACCA GCAGCCTTTG CTCCGTGGCG TGGCTTATGA TAGATATTTT
  TCTTTGTGAC TTTTACCTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52034766	NES15054956	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36314964					SNP	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52034766	NES15054956	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92133701 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22145	CpG island 22145	892 bp distal
Gm67683	predicted gene, 67683	1131 bp upstream
Plscr1	phospholipid scramblase 1	within coordinates
Rr206878	regulatory region 206878	within coordinates
Rr383753	regulatory region 383753	277 bp downstream
Rr401603	regulatory region 401603	1247 bp upstream
Tssr86494	transcription start site region 86494	1981 bp downstream
Tssr86495	transcription start site region 86495	1959 bp downstream
Tssr86496	transcription start site region 86496	1919 bp downstream
Tssr86497	transcription start site region 86497	1895 bp downstream
Tssr86498	transcription start site region 86498	1614 bp downstream
Tssr86499	transcription start site region 86499	1588 bp downstream
Tssr86500	transcription start site region 86500	1580 bp downstream
Tssr86501	transcription start site region 86501	1550 bp downstream
Tssr86502	transcription start site region 86502	1521 bp downstream
Tssr86503	transcription start site region 86503	1461 bp downstream
Tssr86504	transcription start site region 86504	1374 bp downstream
Tssr86505	transcription start site region 86505	1337 bp downstream
Tssr90887	transcription start site region 90887	1162 bp upstream
Tssr90888	transcription start site region 90888	1120 bp upstream