rs36316263 SNP Detail

Summary

• ID
  rs36316263
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15229790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTAGGTC ACACTACCCT
  ACCCCTGATC ATTAATGCCA CTGCATTCAT AGGATATGTT CTTCCATAGG GACAAATAAT
  TACATCTTTC AGCCATCCTA TATATTGGGG CTGCCCTAGT AGAACGAATC TCTTATTAGG
  CTCAAAACAA TCCCATAGGC AGGTGCAGAT ACAATCTCAA TTAGTAGCCT TTCTACACTT
  W
  GGAGATACTG ATAACTATAT GCCTGCTAAC CTACTTGGCA CCCTCACCAC ATGAAGTCAG
  AACAATACTT GCCTATACCA TACTGTGGTA TTTTGTTAGG GAAAGCAATG TAGTACACAT
  CACCCTTCTC AAATTTATTA TAAATTTCAA TAGCTAATTT ATGAGGGGAA ACGTGCTGGA
  AAGTGCTTGG AATAATCACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51990116	NES15005927	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36316263					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51990116	NES15005927	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15229790 () rs orientation: forward

Symbol	Name	Function Class
Cep295	centrosomal protein 295	within coordinates
Gm22579	predicted gene, 22579	1686 bp downstream
Gm23455	predicted gene, 23455	1906 bp downstream
Rr208215	regulatory region 208215	1990 bp distal
Taf1d	TATA-box binding protein associated factor, RNA polymerase I, D	1503 bp downstream