rs36316613 SNP Detail

Summary

• ID
  rs36316613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6920372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTGAGGACCA GCCAGGTCCC TACCTGGCCC CAGGTCTCCT GGGGAGCAAC
  R
  TTCATCAGCA GGGACGGGCA GCCACCAACA GTCATCATGG AGGTAGGTTC           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50594180	NES13645549	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36316613					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50594180	NES13645549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6920372 () rs orientation: forward

Symbol	Name	Function Class
Bad	BCL2-associated agonist of cell death	within coordinates
Cpgi10534	CpG island 10534	352 bp distal
Gpr137	G protein-coupled receptor 137	554 bp upstream
Rr405833	regulatory region 405833	1341 bp downstream
Rr405834	regulatory region 405834	1004 bp downstream
Rr405835	regulatory region 405835	299 bp downstream
Rr543510	regulatory region 543510	671 bp distal
Rr543511	regulatory region 543511	1119 bp distal
Rr543512	regulatory region 543512	430 bp distal
Tssr154697	transcription start site region 154697	1114 bp downstream
Tssr154698	transcription start site region 154698	1072 bp downstream
Tssr154699	transcription start site region 154699	420 bp downstream
Tssr154700	transcription start site region 154700	397 bp downstream
Tssr154701	transcription start site region 154701	366 bp downstream
Tssr157902	transcription start site region 157902	1486 bp upstream
Tssr157903	transcription start site region 157903	1174 bp upstream
Tssr157904	transcription start site region 157904	561 bp upstream