rs36316965 SNP Detail

Summary

• ID
  rs36316965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87972454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAAAATA AAACTTCAAG
  TGCATGCTTT TCTGTGTGGT TGTAATTTTG TGTTGCCTAT ATTGGCCCAG AAAGTTACTG
  ACAGTAATAT AAAGCCCTTC AACAATTAAA TCATAACTCC AAAGACCCAC AGGTTCACAG
  TTCTATTAAA CCATTATTTT ACCTTTTCAC TGCCTATATC TGCTTACAGT TGGCCACAGC
  R
  TGAATCCCAA AGCCTCATCA ATGTCCTCCA TGTTCCCTCC AATTCCAGTC AAAGAAGAGA
  AATCCCTGAG AACTTAATCC TGCTGGTGAG ATAAGAAAGA CAGACCATTT TGTTGGTTAA
  GCCAGTTAAG AGTTTATAAA TCATCTATCT TTGGCTAGTG ATGAAGAGTG GGCTAATACT
  TCAAAGTATT GGTACCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51174244	NES13832866	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36316965					SNP	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51174244	NES13832866	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87972454 () rs orientation: forward

Symbol	Name	Function Class
Csn1s2b	casein alpha s2-like B	174 bp downstream
Gm42794	predicted gene 42794	within coordinates
Prr27	proline rich 27	1102 bp upstream
Rr378252	regulatory region 378252	899 bp downstream
Tssr46931	transcription start site region 46931	1080 bp upstream
Tssr46932	transcription start site region 46932	1164 bp upstream