rs36317562 SNP Detail

Summary

• ID
  rs36317562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37419012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATCTGTGA CTCCCCGGGG AGGACAAGCC TGCTGGGATC
  GGGCGGAAGG TGCAGGGGTT AAATCGGGCT GTGCATCCAA AAGGAAGGCA AAAAGGCAGC
  R
  CTCATCCCAA GAAAGTCCTC GCGCAACAAG CCCACTCCCC ACTAGGGCTC CAGACAAACT
  TTGAGACTCC CTTGGGCTCT TGAGCTCTGC CCCTGGATCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss51603174	NES14852137	PERLEGEN	MM_PANEL2	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs36317562					SNP	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51603174	NES14852137	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37419012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17302	CpG island 17302	within coordinates
Creb3l2	cAMP responsive element binding protein 3-like 2	within coordinates
Gm33318	predicted gene, 33318	433 bp upstream
Gm67278	predicted gene, 67278	430 bp downstream
Rr399613	regulatory region 399613	43 bp upstream
Rr628663	regulatory region 628663	within coordinates
Rr628664	regulatory region 628664	59 bp proximal
Rr628665	regulatory region 628665	272 bp proximal
Rr628666	regulatory region 628666	478 bp proximal
Tssr55612	transcription start site region 55612	424 bp upstream
Tssr55613	transcription start site region 55613	466 bp upstream
Tssr60356	transcription start site region 60356	149 bp upstream
Tssr60357	transcription start site region 60357	18 bp downstream
Tssr60358	transcription start site region 60358	82 bp downstream