rs36320280 SNP Detail

Summary

• ID
  rs36320280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTAAGG TTCACGAGTA
  CTATTCATGG CTTATTTCTC TGGGCCATGG TAGGTTTGAG GAGGCATACT TCCTAGTTTT
  CTTCCCCTAA GTCGTCAAAG TCCTGAAGGG GGACAGTCTT TACAAGCACA TGTTCTGTAA
  TCTGATTCAA CCTACCCAGT AAACTTGGCG AAGCAAAGTA GAATCATTAT CACAGGAAGC
  R
  AAGGCAACCT AAATGTGCAA GCAATAGGAA AATGTGGAAG CCCATCATAG TACTTGGACT
  TCATCTGCTT TTGTGCCTTC ACTAAGTTTT TAAACATGAG CTGGCTCCTA TCTGCCATTG
  GCAAGGCTGG GCACTACCCA CAACCTACTT CAAGGACCTC TATACCGTGA GATTACACAC
  ATACATCAAA ATTTGGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51676635	NES14820456	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A		G	A	G		A
ss321815812	CHEV_6_70677325	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36320280					SNP	A	A	G	A	A	A	G	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676635	NES14820456	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704315 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1882 bp upstream
Gm68839	predicted gene, 68839	365 bp upstream
Igk	immunoglobulin kappa chain complex	577 bp downstream
Igkc	immunoglobulin kappa constant	577 bp downstream
Rr158	regulatory region 158	1380 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1896 bp downstream
Rr399685	regulatory region 399685	1484 bp downstream
Rr399686	regulatory region 399686	520 bp downstream
Tssr1880	transcription start site region 1880	480 bp downstream
Tssr56956	transcription start site region 56956	1498 bp downstream
Tssr56957	transcription start site region 56957	859 bp downstream
Tssr56958	transcription start site region 56958	843 bp downstream
Tssr56959	transcription start site region 56959	825 bp downstream
Tssr56960	transcription start site region 56960	810 bp downstream
Tssr56961	transcription start site region 56961	794 bp downstream
Tssr56962	transcription start site region 56962	782 bp downstream
Tssr56963	transcription start site region 56963	735 bp downstream
Tssr56964	transcription start site region 56964	724 bp downstream
Tssr56965	transcription start site region 56965	712 bp downstream
Tssr56966	transcription start site region 56966	704 bp downstream
Tssr56967	transcription start site region 56967	684 bp downstream
Tssr56968	transcription start site region 56968	654 bp downstream
Tssr56969	transcription start site region 56969	630 bp downstream
Tssr56970	transcription start site region 56970	611 bp downstream
Tssr56971	transcription start site region 56971	599 bp downstream
Tssr56972	transcription start site region 56972	540 bp downstream
Tssr56973	transcription start site region 56973	529 bp downstream
Tssr56974	transcription start site region 56974	499 bp downstream
Tssr56975	transcription start site region 56975	462 bp downstream
Tssr61321	transcription start site region 61321	822 bp upstream
Tssr61322	transcription start site region 61322	674 bp upstream
Tssr61323	transcription start site region 61323	593 bp upstream
Tssr61324	transcription start site region 61324	516 bp upstream
Tssr61325	transcription start site region 61325	483 bp upstream
Tssr61326	transcription start site region 61326	470 bp upstream
Tssr61327	transcription start site region 61327	444 bp upstream
Tssr61328	transcription start site region 61328	366 bp upstream