rs36323242 SNP Detail

Summary

• ID
  rs36323242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69627708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAGACTA CAGGAGTGTG
  GCGAGGAGGA GAATGAGGTG GAATGGAAAG ACTATTAGTA ATATTTTCTT CAAACCCCTC
  CCCTATTCAA ATGAATAGGT TCTTGGGTCC TTCATATTTG TTCATTTATG AATAATAAAT
  AACTGCCCCT TAGCTATAAC TTTCAAATAT GAACTTCATG CCCAATCCAA AAAGGAAATC
  Y
  TCCCACTTCT ATTTGATAAG ATGAATTCAA ATTTAAACCC TCTTCATTGG GGAACAAAGA
  CCCTCTACTG TCATAGGGTC CTGGAGTCCA ATTAGAGTCA TTAGCCTAAA TTGGAATAGT
  GTGATCCTCT AGATATGCCA CTTGGCTAAA GGCAGGCTTA GTAAGAAAAA TTCTTTGCCT
  CATTTACCTG AATAGTGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50978986	NES13929384	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36323242					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978986	NES13929384	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69627708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13262	CpG island 13262	1338 bp proximal
D3Mit22	DNA segment, Chr 3, Massachusetts Institute of Technology 22	1963 bp distal
Nmd3	NMD3 ribosome export adaptor	1646 bp upstream
Rr77744	regulatory region 77744	1092 bp proximal
Rr397719	regulatory region 397719	1460 bp upstream
Tssr29546	transcription start site region 29546	1621 bp upstream
Tssr29547	transcription start site region 29547	1714 bp upstream