rs36323254 SNP Detail

Summary

• ID
  rs36323254
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:41019162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGAGACA CATTTCCAAG
  GTCAGTACTC AGGAATTTCA CACTCCACAT GCCCAGCTGA GGGGATCTTT TTAGATTTTT
  TGCTAAAATG TCCCCAATCA AAAATTCCTG AGGTTCTGGG CTTCTCTCTT TTCTGAGTCT
  TTGTCACATG GTCTCCTATT TTTTGTTTTA AGTCATCACA GCCACTCTCA ACTTCATTCC
  K
  TGATGTTCTT TTCACACAAT CCAATATTTC AACTCGTTTT TGAGTATAAC TAATCTGTTA
  GCCTTATGTA CAGTGTTAGC TTTAAAAGAG AAAGAGATTA GATAGGTAAA GGGGGAGGGA
  TAAAACAGAA AAAACATCTT CAAAGAGAAA GTTAAAAACA GAAATCAAAA GTTTTAGCAG
  CTACCAAGAT GCTTTTCATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50828486	NES13536824	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36323254					SNP	T	T	T	T	T	T	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828486	NES13536824	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41019162 () rs orientation: forward

Symbol	Name	Function Class
Dntt	deoxynucleotidyltransferase, terminal	within coordinates
Rr365008	regulatory region 365008	562 bp distal
Rr365009	regulatory region 365009	within coordinates
Rr370496	regulatory region 370496	1299 bp downstream
Rr370497	regulatory region 370497	408 bp upstream
Tssr5510	transcription start site region 5510	488 bp downstream
Tssr156412	transcription start site region 156412	1325 bp downstream
Tssr159242	transcription start site region 159242	399 bp downstream
Tssr159243	transcription start site region 159243	429 bp downstream
Tssr159244	transcription start site region 159244	450 bp downstream
Tssr159245	transcription start site region 159245	459 bp downstream
Tssr159246	transcription start site region 159246	1321 bp downstream
Tssr159247	transcription start site region 159247	1335 bp downstream