rs36324535 SNP Detail

Summary

• ID
  rs36324535
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61328141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGTCTCAA AGTTCACCAC TCACTGTGCT GAAAGACTTT
  ATATAAATCA TACCTGTCCC ATTGACCCTG CTTAGAATGA ACTCGGCACC TGCCAGTCTT
  M
  TTCTGTCCGA GACACTACAG CCACTCGGCT CACAGGGAGG ACAGTACTCC TGAGCACAGC
  ACTACAGCCA CTCGGCTCAC AGGGAGGACA GTACTCCTGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50413756	NES13453168	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36324535					SNP	C	C	C	C	C	A	C	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413756	NES13453168	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61328141 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	942 bp distal
Rr356345	regulatory region 356345	59 bp distal
Slc26a2	solute carrier family 26 (sulfate transporter), member 2	1785 bp downstream
Tssr153542	transcription start site region 153542	1129 bp downstream
Tssr153543	transcription start site region 153543	1295 bp downstream
Tssr153544	transcription start site region 153544	1477 bp downstream