rs36325259 SNP Detail

Summary

• ID
  rs36325259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140843723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTCCAG GCCCCAGAGG
  ACAGCACCCC AGCCAGACAC CTTACTGACC TCGGAAGAAA GTGCTGAAGT CGAAGATGGG
  GGTGTGGCGG TTGCGCTCCA GCAGCTGGGG TGGGGTGGAG GGGCCGGTAG TGCCCATAGG
  GCTGCCTACC TCCCAGTACA CCTTGCACTT GCCCATACGC AGGGCCCACA GTGACGGTCC
  Y
  CGAAGCTCCA GCTGAAGGCC GGGAGACACA TGCTGGAGAA GCGTCTCTGT GTAGTGCAGC
  TGCTTCTGAT CTGGGAGCTC AGCAGGACTG GGAAAGATCA CCGGCTGGGG CTCTGAAGTT
  CTTACTGCTG GGGCCATGGG GCTGTACAGG AACACGCATC TGGGGTGCCC CACCACTGCC
  TGTAGCACTG TGCGGCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51935586	NES14951798	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36325259					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51935586	NES14951798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140843723 () rs orientation: forward

Symbol	Name	Function Class
Irf7	interferon regulatory factor 7	within coordinates
Phrf1	PHD and ring finger domains 1	1060 bp downstream
Rr154683	regulatory region 154683	1278 bp proximal
Rr166948	regulatory region 166948	1077 bp proximal
Tssr69941	transcription start site region 69941	612 bp downstream
Tssr69942	transcription start site region 69942	1602 bp upstream
Tssr75604	transcription start site region 75604	240 bp upstream
Tssr75605	transcription start site region 75605	46 bp upstream
Tssr75606	transcription start site region 75606	11 bp downstream
Tssr75607	transcription start site region 75607	87 bp downstream
Tssr75608	transcription start site region 75608	144 bp downstream
Tssr75609	transcription start site region 75609	162 bp downstream
Tssr75610	transcription start site region 75610	187 bp downstream
Tssr75611	transcription start site region 75611	443 bp downstream
Tssr75612	transcription start site region 75612	705 bp downstream
Tssr75613	transcription start site region 75613	1433 bp downstream
Tssr75614	transcription start site region 75614	1643 bp downstream
Tssr75615	transcription start site region 75615	1909 bp downstream