rs36325279 SNP Detail

Summary

• ID
  rs36325279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12826833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATTATTT GGTAGCTGTT
  TTTTATTGGG CCTTGGCTGT CCTGGAATTT TAGTTCTGTA GACCAGGCTG CCTGCTTGTT
  TCTGCCTCTG CAGTGTTGGG ATAGCCCAAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAAAGCAC TTTGTGGAAG TTCATTTGTG
  Y
  TTACAATGTT CTGTGGGAAG AACTGAGAAC AAAGTAAAGA ATGAAGAATG GTCACTGTTG
  GTTAGTCAGG TTGTGGCTGT ATTTGAAATT GAATTCAGGT TTCACTGGGA TTTTTCTGTG
  TGTGTGTGTG TGTTGGTTTG ATCCTAGCTC TACAGTGAAG GGAAATTTGT CTGTGGAGGA
  TGGAGGACGT CTTTCCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51593098	NES14609153	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs36325279					SNP	T	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51593098	NES14609153	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12826833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6961	CpG island 6961	1391 bp distal
D15Mit199	DNA segment, Chr 15, Massachusetts Institute of Technology 199	7 bp distal
Drosha	drosha, ribonuclease type III	within coordinates
Rr311575	regulatory region 311575	232 bp distal
Rr369910	regulatory region 369910	1842 bp downstream
Rr369911	regulatory region 369911	1606 bp downstream
Tssr130744	transcription start site region 130744	1914 bp downstream
Tssr130745	transcription start site region 130745	1864 bp downstream
Tssr130746	transcription start site region 130746	1840 bp downstream