rs36325527 SNP Detail

Summary

• ID
  rs36325527
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69816022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACCACA GAAGCCAAGG
  TTCTTTCATG GTACTATACC ACGTGTGCTT TCTTCGTTAG AATGACTATG ACTTATTTTA
  CAACTGTTCT GGAAATGTCT CAGCTTTCAG CAGCAGAGAC ATGTCTGCCA CTACTTTTGT
  TCACTTGTTT GTTTGTTTTT GAGACAGAGT TTATGGCTCA GTATGGCTTC ATTCTGTCAG
  K
  TCTCATCTTT CAATCTCCCA ACTACACACA CTACCATGCA TGGTTTTTTA CATAACTTAA
  AAAAAAAAAA AAGTCCCCGA GGCTACTTTC CCCTTACAAA CGCTTGTGAG CTCTGTCACC
  TCTGTTTTCT AGTAAGGGGT GGGCCACTCA CCCCCTCTGA TACCGATCCA GCTCGTGAAG
  CACCGTGTGG TCGCAGTACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51016759	NES14398947	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36325527					SNP	T	T	T	T	T	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51016759	NES14398947	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69816022 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Rr467133	regulatory region 467133	1457 bp distal
Tssr116524	transcription start site region 116524	1956 bp upstream
Tssr116525	transcription start site region 116525	55 bp downstream
Tssr116526	transcription start site region 116526	485 bp downstream