rs36329470 SNP Detail

Summary

• ID
  rs36329470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:50845655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGTTAG ACTCTTGAAG
  ACCCTAAAAG TTGTTTATTC CTCATGAAAC TCTCTTGATT CCTCACCTGT AGTCATTTAA
  GCTGAAAGAA ATCTTTGTTA GGTTGGTTAC AGGCACATTT AATAAACTAA ATCCTCCTTC
  TCCACATAGC TGAGTGGCAC TATCCTGTGG GGAAGGTCCT GCTCAGCACT GTTTGCCCAT
  R
  TCTTTGCTAA TCCTAAGTTC ACTGATGTTA CTGTGGTTGG TTTACTGAAA TCTTCTTGTA
  CTGCTTTTAT TTGCCTTTGC TTAAATCTTC TCTATTTTGA CAGTGGAAAT TCTTTAAAAT
  TGGCTTCTAT ATCTTTTTGA CACATCTTCA AATCTTATTT TTGAGCACTA TTCTACTTCA
  TGCCTCTCCA AGGTATTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50863452	NES14174767	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36329470					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50863452	NES14174767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:50845655 () rs orientation: forward

Symbol	Name	Function Class
Sim1	single-minded family bHLH transcription factor 1	within coordinates
Tssr93227	transcription start site region 93227	194 bp downstream