rs36329566 SNP Detail

Summary

• ID
  rs36329566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7193249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCAGGCAG GAGTCTTACT ATGCACCCCA CCCAGACCTG
  GGCTTAAACT TGAGATTCTC CTGTTCCTGA TGCCCTGGTC CTGGAAATAC ACTCAAGTGC
  Y
  ACTATGCTCA CTGGTGTGTA TGTGTGCTGT TTTCCATGTG GGTGAAGGCC AGAGCTTGAT
  GTCTGGCATC TCATCTAACA GCTCTCCATC TTTTCTTTCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50592956	NES13646699	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36329566					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50592956	NES13646699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7193249 () rs orientation: forward

Symbol	Name	Function Class
Cox8a	cytochrome c oxidase subunit 8A	within coordinates
Cpgi10550	CpG island 10550	1247 bp proximal
Gm59070	predicted gene, 59070	within coordinates
Rr405837	regulatory region 405837	1580 bp upstream
Rr543609	regulatory region 543609	1862 bp distal
Rr543610	regulatory region 543610	894 bp distal
Rr543611	regulatory region 543611	1722 bp proximal
Rr543612	regulatory region 543612	1801 bp proximal
Tssr154738	transcription start site region 154738	1977 bp upstream
Tssr157942	transcription start site region 157942	491 bp upstream
Tssr157943	transcription start site region 157943	1639 bp downstream
Tssr157944	transcription start site region 157944	1645 bp downstream
Tssr157945	transcription start site region 157945	1665 bp downstream