rs36331675 SNP Detail

Summary

• ID
  rs36331675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36053178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGCAAC AATATGCATA
  TACCCTTTAC ATGCAACTAT GCAACCAGCA GGACTAGTAT CTCCCAAGGG TCATGTGAGG
  AACACCGGAG GCTTAGCATC CTGGGAGGCA CACTTTCTCA GATGCTGTCA CTCTGGAGCC
  AACTGGGAAA ACATCCATCT TTGGCGGGAG AGCTCTGCTT GATGGCTTCT TCAGAGACTG
  R
  TGCTCTTACA AATCTTTCCA ATTCAGCCCA CCCCACATTC TTGCTCTTCA AGGAGGAAAA
  CTTAACTTTC CTGGTCTTTT AAAGGAATTT TTCAGCTTGG AGCATTGTTT TCCCCTCTGA
  CCTCTCCAGG TAAGTTAGGG TTTAAGGCTT TTCCAGTCCT GCCTAAGAAA TCACAGCTTT
  GTCATGTATC CAACCTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51452920	NES14433126	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36331675					SNP	A	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51452920	NES14433126	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36053178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	1208 bp proximal
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	within coordinates
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	884 bp upstream
Rr397641	regulatory region 397641	1525 bp upstream
Rr575296	regulatory region 575296	714 bp proximal
Rr575297	regulatory region 575297	916 bp proximal
Rr575298	regulatory region 575298	1639 bp proximal
Rr575299	regulatory region 575299	1741 bp proximal
Tssr28858	transcription start site region 28858	1388 bp upstream
Tssr33012	transcription start site region 33012	1535 bp downstream
Tssr33013	transcription start site region 33013	1588 bp downstream
Tssr33014	transcription start site region 33014	1621 bp downstream
Tssr33015	transcription start site region 33015	1633 bp downstream