rs36333571 SNP Detail

Summary

• ID
  rs36333571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40693254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT TCCACTTAGC AAGGGTAGAT
  R
  ATAAAAAGGG TATAACCCAC AGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52005356	NES15019190	PERLEGEN	MM_PANEL2	f	SNP	A		G	G		A
ss322919580	CHEV_9_40590041	CHEVERUD	SCREENING_POP	f	SNP		A			A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs36333571					SNP	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005356	NES15019190	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40693254 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	293 bp proximal
Gm16096	predicted gene 16096	within coordinates
Rr676920	regulatory region 676920	1430 bp proximal
Tssr84467	transcription start site region 84467	1593 bp downstream
Tssr84468	transcription start site region 84468	868 bp downstream
Tssr84469	transcription start site region 84469	781 bp downstream
Tssr84470	transcription start site region 84470	319 bp upstream
Tssr84471	transcription start site region 84471	446 bp upstream
Tssr88968	transcription start site region 88968	1097 bp downstream
Tssr88969	transcription start site region 88969	1692 bp downstream