rs36334228 SNP Detail

Summary

• ID
  rs36334228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16678379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCCTTGC TTCAAAAAAC AAAGCCAGAA TAAATGACCC
  TGGTGGAAGC CTCTATTCTT TCCAAGGAGG TGTCTGTCTA TCCCTTGAAG TGAGACTGAT
  Y
  ACCTTCAGTG GTTTTCACAG TGACTTTGTC TTCCTTCTTG GCTCACTAGT CCCTAAACCC
  TCCTTCCCAC CTGGCCCTTT AAGAGCAGCT GCTGCGACCG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51882291	NES14894008	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36334228					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882291	NES14894008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16678379 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	within coordinates
Cpgi18407	CpG island 18407	1806 bp proximal
Gm71929	predicted gene, 71929	838 bp downstream
Pnma8b	PNMA family member 8B	228 bp upstream
Rr368243	regulatory region 368243	2 bp upstream
Rr642821	regulatory region 642821	1085 bp distal
Rr642822	regulatory region 642822	within coordinates
Rr642823	regulatory region 642823	151 bp proximal
Rr642824	regulatory region 642824	1189 bp proximal
Tssr64660	transcription start site region 64660	191 bp upstream
Tssr64661	transcription start site region 64661	1240 bp upstream
Tssr70792	transcription start site region 70792	1195 bp downstream