rs36334709 SNP Detail

Summary

• ID
  rs36334709
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143565755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTATTCT TTATTATTAA
  TATTTAAACT TAATTAAATT ACAAGTTTAT TTATATTAAA TGAAGTAACA GGTTTTGTTT
  TATTGAATTA TTTTAATGCA ATTATGAACA CAGAGCTAAC TTTTGTCATC GCAACTCAAA
  TCTGAAAGTT GAATGAACTC AAGTGGGCTT TATCATTAAC CCACTCTATG AAAATTGGAG
  K
  TTTTGTTAAA TATAACATTT TGAAAGCCTT AAAAATGTTT AAATGCTGTC CCTTTCCTGC
  AGAAGTATTA GATACATATG ATCCTTATCT TCACTGCCAA GTAAGCATTC ACACATGTGC
  ATATACACAT GCACGCACAC ATACACACAC ACACACACGC ACACACACAT GCATGCCTCA
  CATCCACACA AATAAAAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51659567	NES14643750	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T	G	T	T	T	G	G	T	G	G
ss136026661	ENSMUSSNP2061067	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36334709					SNP	G	G	T	T	T	G	T	G	T	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51659567	NES14643750	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143565755 () rs orientation: forward

Symbol	Name	Function Class
Gm33925	predicted gene, 33925	within coordinates
Gm40160	predicted gene, 40160	1441 bp downstream