rs36335233 SNP Detail

Summary

• ID
  rs36335233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40988881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACGATGGG TGGATTTAGT GCCTCGCCTT AGGGATGGGG
  CTATCCACAT AACAGTGCCC TTCATACACA TAGTATTGAC TGAGTGGAGC TCTTTGCAGC
  R
  TTGAGAGTTT AAATAAAAAA ATGTACAGTT CTTGGGCACA ACTGAGGGTG CATCATATAT
  GTGAGTGGAA TGGCCATCCA GCCTGATGGG TTGCCAGCAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50702365	NES14262540	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36335233					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50702365	NES14262540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40988881 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr138	DNA Segment, Chr 9, Derry C. Roopenian 138	873 bp distal
Rr206246	regulatory region 206246	1719 bp proximal
Tssr88989	transcription start site region 88989	1863 bp upstream
Ubash3b	ubiquitin associated and SH3 domain containing, B	within coordinates