rs36337279 SNP Detail

Summary

• ID
  rs36337279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:59997352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAACCGAT CCCAGATTCT
  GGAAGTGGGA AGGACTTCGA AGCAGCCTCT CCAAGGTCAA CCACGTCACA CCTCCGACCC
  TTACTCTTGA GATGGTCAGC TTCATTTCCA GCCATGCTAA TAATAGCCAA GGGAGAATCT
  GACCATAACA TATCAAGGTC ATTACGGACG CTTGAGAAAT CAAGCAGCCT GGTGATGGGA
  R
  GTGGCACAAC TTCTTGTCCT GCCTGAATGC TCAACCACAA AGAGAAAGCA TCAGCAGTCA
  CAGCGAGGCA GGAGCTAACA CGGGAGTACG AGCCACAAAG AGCACAGGAC ATATTTGTTT
  GCTATGTGGT ACTTTGTTCA CCGTAAATGC CTCTTGAGCT TCCATCAGAA TCTAAAGCAT
  GTTTTCGTGT GTATTTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52023976	NES15040322	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G	A		G	G	G
ss136530829	ENSMUSSNP1766328	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36337279					SNP	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52023976	NES15040322	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:59997352 () rs orientation: forward

Symbol	Name	Function Class
Rr196116	regulatory region 196116	1552 bp distal
Rr204367	regulatory region 204367	1595 bp distal
Rr209877	regulatory region 209877	within coordinates
Thsd4	thrombospondin, type I, domain containing 4	within coordinates