rs36338482 SNP Detail

Summary

• ID
  rs36338482
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57174820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGATGTCA AGCTTCGGCT
  TTCTGAAGGG ATTACCTTCT TCCCAGCACC CCAACCCCCA GTTCAAAGGT TTGAAGGGGG
  CTGCCAACCC AGTTCCTTCT CAGCTCAACA TGCACCTTGC CCCAGTGCTA ACACGCCTCC
  CCTCCTACCA TGGGCAAGCC AGGGGAACTG TCTTCCAGGT CTTCCTAAGG CTGGCTGCTG
  W
  CCCCTCATTA GTGGCCTGCT GGGGTTTCTG TCACTTAGGG CTGGTTACTA AGCAACCAGA
  TCCAAGAAGA GCTCTGGACT GGCAGAACAG AGTGGCTGCT GAGGGGCAAG GGGTAACGGG
  GAGAGGTCAG CAGGCCGGTG ACCTGGGTCA TGGTCAAAAG GTTTCAGAAT GGGGCCTCGG
  AACCATGTCC TGTCAATACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52020740	NES15041798	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36338482					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52020740	NES15041798	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57174820 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	within coordinates
Gm68491	predicted gene, 68491	1874 bp downstream
Rr679626	regulatory region 679626	within coordinates
Rr679627	regulatory region 679627	1020 bp proximal
Tssr89773	transcription start site region 89773	1747 bp upstream
Tssr89774	transcription start site region 89774	1719 bp upstream