rs36338615 SNP Detail

Summary

• ID
  rs36338615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:47448193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATAGAATA TAGATTCCAG
  AATTTCAATT TTTAGGTTGG AATCTTTGAC ATTCAGTAAT ACTGAGTTTG AGCAAATTAT
  TTGATGTCGC TGAACCTGAG GTTTTTTTGT AAGATGTAGA TGGTGTCATC TCTGGGGGCT
  CTTGAGTTTG GGGCAGCAAA GTGAGATCCT GCCTCTAAAA CAAAACAAAA AGTGCTGTAT
  R
  GGCAGTCCAG TGTAATAACC TATAGTGGAT TTTAGTTTCT TTCCTTCTGT GGGATAGTTC
  TTTATGGTGG AGTGGTTTGA GAATGGTTGG GGAGGTGGTA CATCAAAAGC AGGTGTAGAA
  GATTAGGATT AAATCATTTA ACAAAGTGTA TATTTCTCTA CTGTGGAGAT TTTCTGGGGC
  AGCAGTTTAG AAAGTTGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51653622	NES14830118	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36338615					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51653622	NES14830118	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:47448193 () rs orientation: forward

Symbol	Name	Function Class
Cul1	cullin 1	within coordinates
D6Dcr7	DNA Segment, Chr 6, Derry C. Roopenian 7	1898 bp distal
D6Mit352	DNA segment, Chr 6, Massachusetts Institute of Technology 352	1895 bp distal