rs36338676 SNP Detail

Summary

• ID
  rs36338676
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:81123625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCTGG TTATCCTGCT
  GTTGCCCTGT GTCATGGAGA TCCTATAGCT TTGCATCAGC AGGACAGGCC CTTTCATGTG
  TCCCAACCTT GCACAAATAA TAAAGATTTG GGGGTACGCT GATTCAGAGT CCTGGATCTG
  GGCCTAGGTG GTAGCTGTGT TTTCAAATGC TCTCATTATA TGCAGATAGC CATGCTTTCT
  K
  TTAGATTTGC CTGAAGATCC CTTAGTCATT ATTGAACATA ATCCTAGTCA ATGTTTAAGA
  CATTTTTTCC TGTCCCCTAA AAATCAATAA AAAAATAAAT CCCCAGAGTC ACTGGATTTC
  AATGAAAAAA TGAAGCTCTA GGCTAAAACT GGCCAAGAAT AGAGTTAGTG TTAGGATTTA
  TAGATAACTT GGTTTTTAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51970012	NES14987253	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36338676					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51970012	NES14987253	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:81123625 () rs orientation: forward

Symbol	Name	Function Class
Gm30605	predicted gene, 30605	1811 bp upstream
Tssr81895	transcription start site region 81895	1934 bp upstream
Tssr81896	transcription start site region 81896	1887 bp upstream
Tssr81897	transcription start site region 81897	1877 bp upstream
Tssr81898	transcription start site region 81898	1862 bp upstream
Tssr81899	transcription start site region 81899	1831 bp upstream
Tssr81900	transcription start site region 81900	1804 bp upstream
Tssr81901	transcription start site region 81901	1791 bp upstream
Tssr81902	transcription start site region 81902	1768 bp upstream
Tssr81903	transcription start site region 81903	1756 bp upstream