rs36339137 SNP Detail

Summary

• ID
  rs36339137
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115455130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCTTCA CATTTTGACC
  ATACTGCGTT GGCCACTGTT CCCTGTGTTT CGCTATGACT TTTCTGTTTA ATGAACCTAC
  TGAGGATGGA TAGCTGAGCG GAGCATCTCA GGGCTGCCAG GGCCTGGGCT CTGACCCTAA
  TAACTCTGCT AACATTTAGA GAGGACGGGA AACAGCCCAG TGTCATTATA CCTCATTTGA
  Y
  AGTGTGGCCC GACATCCTTG ATAAAAACAA AGGACTTGGG ATAGGACAAG TAAGCTGCAA
  ACCTTGGAAG CTTCCGGGAA GAGGGAGATA GGGAAAAGGA AGAGAAAAAA ATCACGCCCT
  CTTGCGTTAG GGAGGCGGAG CGCGGCGGTG GGGGTTAGGG CCAAGGGTTG TCTATCAAGA
  AAGAGTGACA GGCCAGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50798466	NES14206643	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36339137					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50798466	NES14206643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115455130 () rs orientation: forward

Symbol	Name	Function Class
Gm68175	predicted gene, 68175	within coordinates
Gm68176	predicted gene, 68176	954 bp downstream
n-R5s92	nuclear encoded rRNA 5S 92	538 bp downstream
Rr370673	regulatory region 370673	1764 bp downstream
Rr687898	regulatory region 687898	1627 bp distal