rs36339189 SNP Detail

Summary

• ID
  rs36339189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18708381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGGACT GTGTAATGGT
  CATTATTTAT AGCAAACCAC ATAGACAGAA ATCTTAGAAT ATCTTTAGGG ACTTGCTGGT
  GTCTGTGAAA TAGGTATTCC TATTGTTTAT CCTCTGCTTT TTGTCTATGA CCCGAGGCTC
  CAGAAGAAAA AGAACTGACC ACATAAAAGG CCACTTGCTT TAGAAGTAAG TGCCATGGAG
  R
  ATCCAAACAA GGCTACGGAA ACACAGAGAT TCTGCTACTA TTGCTTACAA ACCTGTGGAA
  TTTTAAAGAA ATGGGTCAAA GCGATAATCT ATCTTTTAAT ATGGGGCACA GATGTGGGAA
  TGGAAACAAA ATCTTTCAGA AATACACTTT AATAAGAAGG GCCCCTCAGG AAGTTAGCCA
  GGGGCTACAG GCACAGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50685048	NES13607309	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36339189					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685048	NES13607309	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18708381 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	1724 bp upstream
Gm50202	predicted gene, 50202	856 bp downstream
Gm59201	predicted gene, 59201	within coordinates
Rr544949	regulatory region 544949	151 bp proximal
Rr544950	regulatory region 544950	338 bp proximal
Rr544951	regulatory region 544951	1705 bp proximal
Tssr155454	transcription start site region 155454	400 bp downstream
Tssr155455	transcription start site region 155455	368 bp downstream
Tssr155456	transcription start site region 155456	328 bp downstream
Tssr155457	transcription start site region 155457	412 bp upstream
Tssr155458	transcription start site region 155458	1723 bp upstream