rs36339258 SNP Detail

Summary

• ID
  rs36339258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66591743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCACTT CGCTCGGTTC
  CCGCGCCGCC GCCGTTCGAA GGGGCGGGGA CACGGGCGGG ATGTCGTCAC ATGACGTCAC
  CGGAGAAGTC CCGATAAAAT GCGAGAGCCG GTCTGGGGCG CCTGAACAGA GAGGATTCCA
  GCGCTGGTGC TGCCTACTGA AGCTCGGTGC GTCTGGCTCG CGGCACTCGC GATTCATCTT
  R
  CGCAGCCCGA GTCTTGGGGG AGCCCCAGAG CCCAGATTGG GGACCTTAGT CTCCCGTGCG
  CAGCGGAGAT CGCCGCGGCG TTTCTGAGAT GCCCGGGAGA AAGGCGCGTC GGAACGCGCC
  AGTGAACCCA ACGCGGGCAG GTACCTAGCA GTTCGGCCCG CGGACACCCA GGCAGGGATG
  GGGTTGAGGT CATACTCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50450326	NES13440896	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36339258					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450326	NES13440896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66591743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	within coordinates
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	within coordinates
Rr405709	regulatory region 405709	within coordinates
Rr539737	regulatory region 539737	69 bp distal
Rr539738	regulatory region 539738	260 bp distal
Rr539739	regulatory region 539739	206 bp distal
Rr539740	regulatory region 539740	within coordinates
Tssr151705	transcription start site region 151705	68 bp downstream