rs36339403 SNP Detail

Summary

• ID
  rs36339403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129051540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAGGTT GGGGTTTTTC
  CCCCCGAAAA GGCATGATAT AATTATATCT CAAATAAGCA AACACCAGAT GACACAAGGT
  GAAGATTTAT GAAGAGTTTC AGTAGCTGAT AAAGACTTCT GCTCTTATTA AAAGCATACT
  GCATTCCAAC AAGCGAGACC CACCTCGTCA GGTGGCAAGT GGATAATCTA ACACATGAGA
  Y
  TTACAGGTGC ACCATTTTGC ACACTAAATT ACTATGCTAG GTGGGTTGTT TTGTTCTAGC
  TTTATTTTGC TTTTGGATGT TTTAGTTTGT TTTTTTTTTA AGTATCTATT TTATGTGTAT
  GAGTGTTTGT GTGTGTCTAT GGACCACTTG TGTGTCTGAT ACCTGCAGAG GTCGGAGGAG
  AGCGCCAGAT TCCCTGTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51624482	NES14657237	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36339403					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624482	NES14657237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129051540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13813	CpG island 13813	1194 bp distal
Gm65501	predicted gene, 65501	within coordinates
Rr584978	regulatory region 584978	744 bp distal
Rr584979	regulatory region 584979	833 bp distal
Rr584980	regulatory region 584980	775 bp proximal
Rr584981	regulatory region 584981	835 bp proximal