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rs36339451 SNP Detail
Summary
  • ID
    rs36339451
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:44385053 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TACACAGCTC TTCCACACCC
ACGGATACTG GGGGAGGAAC AGGCCTGGAC AGCAGCAAGT CCTGGGTGCT CTTGATACAC
TCAGGCAACT AGCTGCATGT CCGGAGAAAG AAAAAAAGGC CAAAGAAAGA AATGTCAGAA
GAAATCAGGT GGGTAAGAGC TTCCTAGGCA GCACTAGGCA GGCTGGGTGG CCACAAAGCA
R
AGAAGGCATG GAAGGTTCAA AACCATGGGA AGCCAAGTTT CTACACAATC CAAGGAGGAA
ACTAAAGCAA TGGATGGAGC CAACACCATG CGGATCCCTG GCAGATGTTC CCCAAGGGCT
TCATCTGGAA ATGCACCTCT TAGCAGCTAC TTACAGACAC TGCCCCTCAA CCTCACTAGT
TCCTGCCCAG CCACGAAAGA                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss50801814 NES13525195 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs36339451 SNP A A A A A A G A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss50801814 NES13525195 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385053 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 541 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 391 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 499 bp proximal
Rr548237 regulatory region 548237 1196 bp distal
Rr548238 regulatory region 548238 255 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 250 bp upstream
Tssr156606 transcription start site region 156606 188 bp downstream
Tssr156607 transcription start site region 156607 118 bp upstream
Tssr156608 transcription start site region 156608 527 bp upstream
Tssr156609 transcription start site region 156609 737 bp upstream
Tssr159447 transcription start site region 159447 1846 bp upstream
Tssr159448 transcription start site region 159448 1820 bp upstream
Tssr159449 transcription start site region 159449 1757 bp upstream
Tssr159450 transcription start site region 159450 1743 bp upstream
Tssr159451 transcription start site region 159451 1663 bp upstream
Tssr159452 transcription start site region 159452 1369 bp upstream
Tssr159453 transcription start site region 159453 1300 bp upstream
Tssr159454 transcription start site region 159454 1281 bp upstream
Tssr159455 transcription start site region 159455 975 bp upstream
Tssr159456 transcription start site region 159456 856 bp upstream
Tssr159457 transcription start site region 159457 827 bp upstream
Tssr159458 transcription start site region 159458 793 bp upstream
Tssr159459 transcription start site region 159459 701 bp upstream
Tssr159460 transcription start site region 159460 665 bp upstream
Tssr159461 transcription start site region 159461 604 bp upstream
Tssr159462 transcription start site region 159462 572 bp upstream
Tssr159463 transcription start site region 159463 533 bp upstream
Tssr159464 transcription start site region 159464 503 bp upstream
Tssr159465 transcription start site region 159465 483 bp upstream
Tssr159466 transcription start site region 159466 465 bp upstream
Tssr159467 transcription start site region 159467 401 bp upstream
Tssr159468 transcription start site region 159468 155 bp upstream
Tssr159469 transcription start site region 159469 90 bp upstream
Tssr159470 transcription start site region 159470 76 bp upstream
Tssr159471 transcription start site region 159471 43 bp upstream
Tssr159472 transcription start site region 159472 17 bp upstream
Tssr159473 transcription start site region 159473 within coordinates
Tssr159474 transcription start site region 159474 11 bp downstream
Tssr159475 transcription start site region 159475 56 bp downstream
Tssr159476 transcription start site region 159476 74 bp downstream
Tssr159477 transcription start site region 159477 94 bp downstream
Tssr159478 transcription start site region 159478 104 bp downstream
Tssr159479 transcription start site region 159479 128 bp downstream
Tssr159480 transcription start site region 159480 156 bp downstream
Tssr159481 transcription start site region 159481 205 bp downstream
Tssr159482 transcription start site region 159482 305 bp downstream
Tssr159483 transcription start site region 159483 396 bp downstream
Tssr159484 transcription start site region 159484 430 bp downstream
Tssr159485 transcription start site region 159485 556 bp downstream
Tssr159486 transcription start site region 159486 563 bp downstream
Tssr159487 transcription start site region 159487 644 bp downstream
Tssr159488 transcription start site region 159488 661 bp downstream
Tssr159489 transcription start site region 159489 715 bp downstream
Tssr159490 transcription start site region 159490 817 bp downstream
Tssr159491 transcription start site region 159491 852 bp downstream
Tssr159492 transcription start site region 159492 903 bp downstream
Tssr159493 transcription start site region 159493 929 bp downstream
Tssr159494 transcription start site region 159494 949 bp downstream
Tssr159495 transcription start site region 159495 1067 bp downstream
Tssr159496 transcription start site region 159496 1137 bp downstream
Tssr159497 transcription start site region 159497 1150 bp downstream
Tssr159498 transcription start site region 159498 1162 bp downstream
Tssr159499 transcription start site region 159499 1192 bp downstream
Tssr159500 transcription start site region 159500 1223 bp downstream
Tssr159501 transcription start site region 159501 1238 bp downstream
Tssr159502 transcription start site region 159502 1274 bp downstream
Tssr159503 transcription start site region 159503 1287 bp downstream
Tssr159504 transcription start site region 159504 1366 bp downstream
Tssr159505 transcription start site region 159505 1479 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory