rs36340086 SNP Detail

Summary

• ID
  rs36340086
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60236784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTGCCCA GGTTGGTCAA
  GGGAGTTAGG AGGCTAGCGG GGGCACTGGG TGGCCATGCT CCCCGATTTC CCACAGTTTC
  AGGGAGGGCC TTGTTGGGAT AGAGCCTCCC CTGTGGCCTG GCTTTGGTGT TAGAACCCGA
  GGGAGATACA AAATCAGCTG GGGAAGTGGA AGCTCTTCTC TCCCTGCCTC AGGTCCAGTA
  K
  TTGAAAATTC ATTTTGAAAC CTTTGGAATC AAGTTTGCCT GGCATTTTGT AATATCTGTT
  TCTCCTCTGT GCTCCAAACA ATGTTGCACT GGTTGCCAAT GAGACGGCAG GAATGTTTGT
  CTTTAAAAAA AAAAAAAAAG AAAAAGCTTG CCTGCCTGGA GGAGAAGCTT GAGAAGTCTG
  GGCAAAACTT CTGCTCCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50866196	NES14170287	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T		G
ss323325388	CHEV_10_59863753	CHEVERUD	SCREENING_POP	f	SNP											G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36340086					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866196	NES14170287	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60236784 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	within coordinates
Rr228097	regulatory region 228097	within coordinates
Tssr93633	transcription start site region 93633	1233 bp downstream
Tssr93634	transcription start site region 93634	1200 bp downstream
Tssr93635	transcription start site region 93635	1129 bp downstream
Tssr93636	transcription start site region 93636	241 bp downstream