rs36341301 SNP Detail

Summary

• ID
  rs36341301
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129307357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATGGATG GAGAGGAGGA
  AGGCAGACTG GCAGGGAGGG GAGAGAGAAG ATAAGCAAAG AACACATTTC AAGGTTTCTG
  AATTAAGCAG TAACCATAAA CACTATGCAA AGGAAGAGTA GGGGCTAATG AACTAAGTTA
  TGATCTACTG TGCTGCTGAT GAAGATGCTG CAGTGGAGTG TGAACAGCAA TGGCCTATGA
  S
  AGAGGAGAGC CTGATGACAG AGTAAGAGGA TATAGGATCT TCAGTAGAAC CTGAACACTT
  CACTGTCTGG AGAGTCCGTG TGGTGGTAAC GGTGGGTGGG CTCGTCTCCC ACCCATTGCT
  TCTATTAGAG TAAAGCTGGA ATCAGGGTTC CATGCACCTG TGGCCCTGAG TTAACAAATG
  CAGCTTAGCA TACCCCACTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51417885	NES13721938	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36341301					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51417885	NES13721938	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129307357 () rs orientation: forward

Symbol	Name	Function Class
Clec2m	C-type lectin domain family 2, member m	within coordinates
Tssr63594	transcription start site region 63594	1344 bp downstream
Tssr63595	transcription start site region 63595	1392 bp downstream
Tssr63596	transcription start site region 63596	1411 bp downstream