rs36341335 SNP Detail

Summary

• ID
  rs36341335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49999895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTGTCT TTGCTCTGTC
  ACAGCTGGAC AAGCATAATG GAGGTGGGAG GTGGGAGGTA AGAGGCTCCA GGGTGACATG
  TTGGTAGGGA GCCATTTTTG ACCATCGGAC CCCAGAGCTT GCTGCCAGGA AAACGAGTAG
  GTTCAGCCAG ACCAAGCCCA GTCTGGATTG AGAGGCCCTG CTTGGTGTCT CTACACAGCA
  R
  AGGTCACAAT GGAAGGAGAC AGGCTTTGTA CTTGCCTCTC CTTAGTCTCT GACCACCAGT
  GAAAATGAAC ATGCTGTTCT TTACAGAGGC TACAGCCTCA GTCCTAGGGA ACAAAATTTT
  GTGCTAGGGT ATCCTGTAAT GTCCCTTCCT TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC
  CTTCCTTCCT TCCTTCCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51109303	NES14348613	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36341335					SNP	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51109303	NES14348613	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49999895 () rs orientation: forward

Symbol	Name	Function Class
Rr286159	regulatory region 286159	309 bp distal
Rr286160	regulatory region 286160	253 bp proximal