rs36341886 SNP Detail

Summary

• ID
  rs36341886
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40289339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACCAGAT TCCCAAGGTA
  CACTGAATTT CCTTCATGGC TTGGTAAGGT GATCCGAATT CCCACGATCC AGCCTCCAGG
  CTAATGTCCT CTATATAGAT GTAAATCTTC TCATTGGTCC TATTTTTCCA ATCATGGGGA
  CACTACAATA CCAGACCAGA GGACCCCAAA CATACTCTCT AGAAACACAT CTCTGGAAAA
  K
  TTAAAGTTCT TTGGTCTTTG GCCATCGGCT ACTTCGGGAA AATCCATAGA AACCCTCTTT
  TACAGCTAAG TACAAGAGTC CGTGGAGGGC CTGTGGTGGC AGCTGGAGAG CTAGGTGTGG
  TAGGTGCACA CTTGTGACTG TGTATGCACA CACTGAGGTA TTTGCCAGGG TTGTGTCTCA
  GACAGTACAA CTGAGCAATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677878	NES13999657	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36341886					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677878	NES13999657	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40289339 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	1633 bp distal
Rr676806	regulatory region 676806	1765 bp distal
Rr676807	regulatory region 676807	1714 bp distal
Rr676808	regulatory region 676808	1207 bp distal
Tssr88904	transcription start site region 88904	1904 bp upstream
Tssr88905	transcription start site region 88905	1780 bp upstream
Tssr88906	transcription start site region 88906	1685 bp upstream
Tssr88907	transcription start site region 88907	1628 bp upstream
Tssr88908	transcription start site region 88908	1599 bp upstream
Tssr88909	transcription start site region 88909	1196 bp upstream