rs36342627 SNP Detail

Summary

• ID
  rs36342627
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:91907692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGT GGGCTATTAA CGTTCTCCCA
  S
  AGCATGATCG TTAGTAGAAA ATACG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50893794	NES14220684	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	G	C	C	C		G		C	G	G		C
ss147299161	ENSMUSSNP1782747	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C					G
ss323389582	CHEV_10_91534575	CHEVERUD	SCREENING_POP	f	SNP												G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36342627					SNP	C	C	C	C	C	C	C	G	C	C	C	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50893794	NES14220684	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:91907692 () rs orientation: forward

Symbol	Name	Function Class
Gm55043	predicted gene, 55043	15 bp upstream
Mir135a-2	microRNA 135a-2	256 bp downstream
Tssr98922	transcription start site region 98922	268 bp downstream
Tssr98923	transcription start site region 98923	1560 bp downstream