rs36342865 SNP Detail

Summary

• ID
  rs36342865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5875989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACATGTA CACACAGTAG
  ATTCATTTAC ATGTATAAAC ATGTAGTAGG CTCATATGCA CACATTTACA TATGGTAGAC
  TCACATGTAC ACACATACTG GAGTGAGTTC CAGGACAGCC AGGGCTACAC TGAGATACAT
  TATCTCAAAA AAACAAAAAA CAAACAAACA AAAAACCCAG ATCACATACA CAAACAGTAG
  R
  CACACTCATA TCACTTGTAC ACATTTACAA GCACATAGTA GGCTCATATG TACACATAAA
  CACACCACAC ACACACACAC ACACACACAC TCTGAGGTTT GTGGACTGCC AGGTAGGCTG
  GTCCCTGCAG ACCCCAGCAT TTCCATCCCC GTCTCCCACG CCCCAGCCCT CTGGCTGGTA
  CCCCTTTCTC TCCCAGCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577296	NES13648690	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36342865					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577296	NES13648690	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5875989 () rs orientation: forward

Symbol	Name	Function Class
Gm55522	predicted gene, 55522	1254 bp upstream
Neat1	nuclear paraspeckle assembly transcript 1 (non-protein coding)	within coordinates
Rr543180	regulatory region 543180	110 bp distal
Rr543181	regulatory region 543181	678 bp proximal
Rr543182	regulatory region 543182	1173 bp proximal
Tssr157766	transcription start site region 157766	20 bp downstream
Tssr157767	transcription start site region 157767	710 bp downstream
Tssr157768	transcription start site region 157768	806 bp downstream
Tssr157769	transcription start site region 157769	868 bp downstream
Tssr157770	transcription start site region 157770	958 bp downstream
Tssr157771	transcription start site region 157771	998 bp downstream