rs36344013 SNP Detail

Summary

• ID
  rs36344013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124715225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG GAGTGTTTCT CCTGCAATGG
  Y
  GAAGTGAGGA AGTGATGTTC ATTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51196616	NES13821434	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	T	T	T	T	T		T	T	T	T		T
ss149203458	ENSMUSSNP6845635	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321672956	CHEV_5_125027171	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36344013					SNP	C	C	C	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196616	NES13821434	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124715225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	1522 bp proximal
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	within coordinates
Gtf2h3	general transcription factor IIH, polypeptide 3	1986 bp upstream
Rr399368	regulatory region 399368	1814 bp upstream
Rr620506	regulatory region 620506	1491 bp proximal
Rr620507	regulatory region 620507	1959 bp proximal
Rr620508	regulatory region 620508	1989 bp proximal
Tssr48907	transcription start site region 48907	1953 bp upstream
Tssr48908	transcription start site region 48908	1972 bp upstream
Tssr53375	transcription start site region 53375	1861 bp downstream
Tssr53376	transcription start site region 53376	1883 bp downstream
Tssr53377	transcription start site region 53377	1921 bp downstream